SpatialDimPlot.ccAFv2
This function generates a spatial visualization of cell cycle states using Seurat’s SpatialDimPlot. It maps the ccAFv2 annotations onto the spatial coordinates of the tissue section, using standardized colors for each predicted cell cycle state.
SpatialDimPlot.ccAFv2(seurat_obj, ...)
| Arguments | Range of Values | Description |
|---|---|---|
| seurat_obj | NA | a seurat object must be supplied to classify, no default |
| … | … | Additional arguments passed to SpatialDimPlot, except for group.by and cols, which are set internally by this function. |
Value
Returns a ggplot object produced by Seurat’s SpatialDimPlot function.
Example
# Assuming seurat_obj contains the `ccAFv2` metadata
SpatialDimPlot.ccAFv2(seurat_obj)